论文标题

蜂蜜蜜蜂中的第一个大规模基因组预测

First large-scale genomic prediction in the honey bee

论文作者

Bernstein, Richard, Du, Manuel, Du, Zhipei G., Strauss, Anja S., Hoppe, Andreas, Bienefeld, Kaspar

论文摘要

基因组选择增加了几种牲畜物种的遗传增长,但由于蜜蜂尚未复杂的遗传学和繁殖生物学。最近,对2个970皇后进行了基因分型来收集参考人群。为了在蜜蜂中应用基因组选择,这项研究分析了蜂蜜产量的基于血统的和基因组繁殖值的预测能力和偏差,三个可加工性状和两个针对寄生虫Varroa Destructor的耐药性。为了估算繁殖价值,我们使用具有母体和直接影响的蜜蜂特异性模型来说明工人和殖民地女王对表型的贡献。我们对上一代和五倍的交叉验证进行了验证。在对上一代的验证中,蜂蜜产量的基于血统的估计繁殖值的预测能力为0.06,可加工性状的预测能力为0.2至0.41。基因组标记数据的包含将这些预测能力提高到蜂蜜产率的0.11,可(可加工性特征)的范围从0.22到0.44。基因组数据的包含并不能提高与疾病相关性状的预测能力。与直接影响的遗传力相比,具有高遗传力的遗传力的特征表现出最有希望的结果。在所有特征中,具有基因组方法的偏见与基于血统的蓝光的偏见接近偏差。结果表明,基因组选择可以成功地应用于蜜蜂。

Genomic selection has increased genetic gain in several livestock species, but due to the complicated genetics and reproduction biology not yet in honey bees. Recently, 2 970 queens were genotyped to gather a reference population. For the application of genomic selection in honey bees, this study analyses the predictive ability and bias of pedigree-based and genomic breeding values for honey yield, three workability traits and two traits for resistance against the parasite Varroa destructor. For breeding value estimation, we use a honey bee-specific model with maternal and direct effects, to account for the contributions of the workers and the queen of a colony to the phenotypes. We conducted a validation for the last generation and a five-fold cross-validation. In the validation for the last generation, the predictive ability of pedigree-based estimated breeding values was 0.06 for honey yield, and ranged from 0.2 to 0.41 for the workability traits. The inclusion of genomic marker data improved these predictive abilities to 0.11 for honey yield, and a range from 0.22 to 0.44 for the workability traits. The inclusion of genomic data did not improve the predictive ability for the disease related traits. Traits with high heritability for maternal effects compared to the heritability for direct effects showed the most promising results. Across all traits, the bias with genomic methods was close to the bias with pedigree-based BLUP. The results show that genomic selection can successfully be applied to honey bees.

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