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Burban-Drozd showed that the degenerate cusp singularities have tame Cohen-Macaulay representation type, and classified all indecomposable Cohen-Macaulay modules over them. One of their main example is the non-isolated singularity $W=xyz$. On the other hand, Abouzaid-Auroux-Efimov-Katzarkov-Orlov showed that $W=xyz$ is mirror to a pair of pants. In this paper, we investigate homological mirror symmetry of these indecomposable Cohen-Macaulay modules for $xyz$. Namely, we show that closed geodesics (with a flat $\mathbb{C}$-bundle) of a hyperbolic pair of pants have a one-to-one correspondence with indecomposable Cohen-Macaulay modules for $xyz$ with multiplicity one that are locally free on the punctured spectrum. In particular, this correspondence is established first by a geometric $A_{\infty}$-functor from the Fukaya category of the pair of pants to the matrix factorization category of $xyz$, and next by the correspondence between Cohen-Macaulay modules and matrix factorizations due to Eisenbud. For the latter, we compute explicit Macaulayfications of modules from Burban-Drozd's classification and find a canonical form of the corresponding matrix factorizations. In the sequel, we will show that indecomposable modules with higher multiplicity correspond to twisted complexes of closed geodesics. We also find mirror images of rank $1$ indecomposable Cohen-Macaulay modules (of band type) over the singularity $W = x^{3} + y^{2} - xyz$ as closed loops in the orbifold sphere $\mathbb{P}^1_{3,2,\infty}$.