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Attention mechanisms have been very popular in deep neural networks, where the Transformer architecture has achieved great success in not only natural language processing but also visual recognition applications. Recently, a new Transformer module, applying on batch dimension rather than spatial/channel dimension, i.e., BatchFormer [18], has been introduced to explore sample relationships for overcoming data scarcity challenges. However, it only works with image-level representations for classification. In this paper, we devise a more general batch Transformer module, BatchFormerV2, which further enables exploring sample relationships for dense representation learning. Specifically, when applying the proposed module, it employs a two-stream pipeline during training, i.e., either with or without a BatchFormerV2 module, where the batchformer stream can be removed for testing. Therefore, the proposed method is a plug-and-play module and can be easily integrated into different vision Transformers without any extra inference cost. Without bells and whistles, we show the effectiveness of the proposed method for a variety of popular visual recognition tasks, including image classification and two important dense prediction tasks: object detection and panoptic segmentation. Particularly, BatchFormerV2 consistently improves current DETR-based detection methods (e.g., DETR, Deformable-DETR, Conditional DETR, and SMCA) by over 1.3%. Code will be made publicly available.