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PALM-3000 (P3K), the second generation adaptive optics (AO) instrument for the 5.1 meter Hale telescope at Palomar Observatory, was released as a facility class instrument in October 2011 and has since been used on-sky for over 600 nights as a workhorse science instrument and testbed for coronagraph and detector development. In late 2019 P3K underwent a significant upgrade to its wavefront sensor (WFS) arm and real-time control (RTC) system to reinforce its position as a state-of-the-art AO facility and extend its faint-end capability for high-resolution imaging and precision radial velocity follow-up of Kepler and TESS targets. The main features of this upgrade include an EM-CCD WFS camera capable of 3.5 kHz framerates, and an advanced Digital signal Processor (DSP) based RTC system to replace the aging GPU based system. Similar to the pre-upgrade system, the Shack-Hartmann wavefront sensor supports multiple pupil sampling modes using a motorized lenslet stage. The default sampling mode with 64x64 subapertures has been re-commissioned on-sky in late 2019, with a successful return to science observations in November 2019. In 64x mode the upgraded system is already achieving K-band Strehl ratios up to 85% on sky and can lock on natural guide stars as faint as mV=16. A 16x16 subaperture mode is scheduled for on-sky commissioning in Fall 2020 and will extend the system's faint limit even further. Here we present the design and on-sky re-commissioning results of the upgraded system, dubbed P3K-II.