论文标题

反应系统等效的SOS规则

SOS Rules for Equivalences of Reaction Systems

论文作者

Brodo, Linda, Bruni, Roberto, Falaschi, Moreno

论文摘要

反应系统(RSS)是受生物系统启发的成功计算框架。一个RS对一组实体以及一组反应。实体可用于实现或抑制每个反应,并通过反应产生。实体也可以通过外部上下文提供。 RS语义是根据(未标记的)重写系统定义的:鉴于当前的实体集,重写步骤由所有应用程序组成,仅启用了启用反应。在本文中,我们首次定义了结构性操作语义(SOS)样式中RSS的标记过渡系统。这是通过提炼签名来实现的,该签名直接与RSS的成分相对应,并通过为任何此类操作员以组成方式定义RS的行为来定义一些简单的SOS推理规则。标签中记录的丰富信息使我们能够定义一种断言语言来量身定制某些特定属性或实体的行为等价。 SOS方法适用于沿着功能,例如对实体的定量测量和RSS之间的通信等功能。 SOS规则也已被利用来设计逻辑编程中的原型实现。

Reaction Systems (RSs) are a successful computational framework inspired by biological systems. A RS pairs a set of entities with a set of reactions over them. Entities can be used to enable or inhibit each reaction, and are produced by reactions. Entities can also be provided by an external context. RS semantics is defined in terms of an (unlabelled) rewrite system: given the current set of entities, a rewrite step consists of the application of all and only the enabled reactions. In this paper we define, for the first time, a labelled transition system for RSs in the structural operational semantics (SOS) style. This is achieved by distilling a signature whose operators directly correspond to the ingredients of RSs and by defining some simple SOS inference rules for any such operator to define the behaviour of the RS in a compositional way. The rich information recorded in the labels allows us to define an assertion language to tailor behavioural equivalences on some specific properties or entities. The SOS approach is suited to drive additional enhancements of RSs along features such as quantitative measurements of entities and communication between RSs. The SOS rules have been also exploited to design a prototype implementation in logic programming.

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