论文标题
基于FRET的结构动力挑战 - 社区对一致和开放科学实践的贡献
The FRET-based structural dynamics challenge -- community contributions to consistent and open science practices
论文作者
论文摘要
单分子Förster共振能量转移(SMFRET)已成为探测生物分子结构动力学的主流技术。通过越来越多的组对技术的快速采用,在技术本身,样品制备和表征的方法,在分析此类实验的数据以及分析代码和算法中的分析中,已经产生了许多改进和变化。最近,一些雇用SMFRET的实验室联合起来,试图将SMFRET社区汇集在一起,以对如何执行实验和分析实现定量结构信息的结果达成共识。这些最近的努力包括使用不同的程序,不同程序,FRET社区的正式组装以及SMFRET程序的开发,以评估不同实验室之间SMFRET的准确性和精度的多LAB盲目测试,并将考虑用于WWPDB的条目。在这里,我们深入研究了现场的不同方法和观点。该立场论文描述了当前的“最新领域”,指出了定量结构研究的未解决方法论问题,提供了一组有关新兴共识的“软建议”,以及公开可用的资源列表。为了取得进一步的进步,我们强烈鼓励“开放科学”实践。我们希望该立场论文将为该领域的新移民提供路线图,并为经验丰富的从业者提供参考。
Single-molecule Förster resonance energy transfer (smFRET) has become a mainstream technique for probing biomolecular structural dynamics. The rapid and wide adoption of the technique by an ever-increasing number of groups has generated many improvements and variations in the technique itself, in methods for sample preparation and characterization, in analysis of the data from such experiments, and in analysis codes and algorithms. Recently, several labs that employ smFRET have joined forces to try to bring the smFRET community together in adopting a consensus on how to perform experiments and analyze results for achieving quantitative structural information. These recent efforts include multi-lab blind-tests to assess the accuracy and precision of smFRET between different labs using different procedures, the formal assembly of the FRET community and development of smFRET procedures to be considered for entries in the wwPDB. Here we delve into the different approaches and viewpoints in the field. This position paper describes the current "state-of-the field", points to unresolved methodological issues for quantitative structural studies, provides a set of 'soft recommendations' about which an emerging consensus exists, and a list of resources that are openly available. To make further progress, we strongly encourage 'open science' practices. We hope that this position paper will provide a roadmap for newcomers to the field, as well as a reference for seasoned practitioners.