论文标题

对主要蛋白酶,依赖RNA的RNA聚合酶和SARS-COV-2的尖峰蛋白的植物代谢物的虚拟筛选:COVID-19的疗法选择

Virtual Screening of Plant Metabolites against Main protease, RNA-dependent RNA polymerase and Spike protein of SARS-CoV-2: Therapeutics option of COVID-19

论文作者

Parvez, Md Sorwer Alam, Azim, Kazi Faizul, Imran, Abdus Shukur, Raihan, Topu, Begum, Aklima, Shammi, Tasfia Saiyara, Howlader, Sabbir, Bhuiyan, Farhana Rumzum, Hasan, Mahmudul

论文摘要

Covid-19,由SARS-COV-2引起的严重呼吸并发症已成为对人类医疗体系的全球威胁之一。本研究评估了植物对主要蛋白酶蛋白(MPP),RNA依赖性RNA聚合酶(RDRP)(RDRP)和SARS-COV-2的SPIKE蛋白(SARS-COV-2)的批准的可能性,包括药物表面分析,通过使用药物重复使用的方法,包括药物表面分析,包括药物表面分析。分子相互作用研究表明,利福平(-16.3 kcal/mol)是MPP的最高抑制剂,在其中,发现了azobechalcone,最有效的植物疗法用于阻断RDRP(-15.9 kcal/mol)和S(-14.4 kcal/mol)SARS-COV-COV-2的蛋白质(-14.4 kcal/mol)。在对所有对接结果进行比较分析之后,Azobechalcone,Rifampin,Inalopharachalcone,Tetrandrine和Fangchinoline被视为靶向SARS-COV-2的关键蛋白质的最潜在抑制植物化合物。但是,氨基酸位置; MPP的H41,C145和M165在药物表面相互作用中起着至关重要的作用,其中F368,L371,L372,A375,W509,L514,Y515对于RDRP至关重要。另外,S蛋白的药物相互作用表面也显示出与所有最大抑制剂的相似模式。 ADME分析还加强了筛选植物疗法的可能性,因为毒品友善最高的SARS-C候选药物。

Covid-19, a serious respiratory complications caused by SARS-CoV-2 has become one of the global threat to human healthcare system. The present study evaluated the possibility of plant originated approved 117 therapeutics against the main protease protein (MPP), RNA-dependent RNA polymerase (RdRp) and spike protein (S) of SARS-CoV-2 including drug surface analysis by using molecular docking through drug repurposing approaches. The molecular interaction study revealed that Rifampin (-16.3 kcal/mol) were topmost inhibitor of MPP where Azobechalcone were found most potent plant therapeutics for blocking the RdRp (-15.9 kcal /mol) and S (-14.4 kcal/mol) protein of SARS-CoV-2. After the comparative analysis of all docking results, Azobechalcone, Rifampin, Isolophirachalcone, Tetrandrine and Fangchinoline were exhibited as the most potential inhibitory plant compounds for targeting the key proteins of SARS-CoV-2. However, amino acid positions; H41, C145, and M165 of MPP played crucial roles for the drug surface interaction where F368, L371, L372, A375, W509, L514, Y515 were pivotal for RdRP. In addition, the drug interaction surface of S proteins also showed similar patterns with all of its maximum inhibitors. ADME analysis also strengthened the possibility of screened plant therapeutics as the potent drug candidates against SARS-C with the highest drug friendliness.

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