论文标题

细菌代谢异质性:从随机到确定性模型

Bacterial Metabolic Heterogeneity: from Stochastic to Deterministic Models

论文作者

Graham, Carl, Harmand, Jérôme, Méléard, Sylvie, Tchouanti, Josué

论文摘要

我们重新审视了纯微生物在两种不同糖上的数字生长的建模,这首先是由monod描述的。大多数可用的模型都是确定性的,并假设微生物生态系统的所有细胞相对于两种糖都均匀地行为,所有糖都消耗了第一个糖,然后在第一个耗尽时切换到第二个糖。我们在这里提出了一个随机模型,该模型描述了所谓的“代谢异质性”。它允许在微流体和大量人群中考虑少数人群,在批处理或化学仪表中,数十亿个个体在培养基中共存。我们强调了使用大种群近似值在实际大培养物中随机模型与确定性行为之间的联系。然后,研究了模型参数值对模型动力学的影响,特别是相对于在实际系统中观察到的滞后相,取决于微生物生长的糖。结果表明,两种代谢参数以及初始条件在系统动力学上都起着至关重要的作用。

We revisit the modeling of the diauxic growth of a pure microorganism on two distinct sugars which was first described by Monod. Most available models are deterministic and make the assumption that all cells of the microbial ecosystem behave homogeneously with respect to both sugars, all consuming the first one and then switching to the second when the first is exhausted. We propose here a stochastic model which describes what is called "metabolic heterogeneity". It allows to consider small populations as in microfluidics as well as large populations where billions of individuals coexist in the medium in a batch or chemostat. We highlight the link between the stochastic model and the deterministic behavior in real large cultures using a large population approximation. Then the influence of model parameter values on model dynamics is studied, notably with respect to the lag-phase observed in real systems depending on the sugars on which the microorganism grows. It is shown that both metabolic parameters as well as initial conditions play a crucial role on system dynamics.

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