论文标题

列举具有单块2凸出的树结构的化学图,从给定的上限和下限在路径频率上

Enumerating Chemical Graphs with Mono-block 2-Augmented Tree Structure from Given Upper and Lower Bounds on Path Frequencies

论文作者

Tamura, Yuui, Nishiyama, Yuhei, Wang, Chenxi, Sun, Yanming, Shurbevski, Aleksandar, Nagamochi, Hiroshi, Akutsu, Tatsuya

论文摘要

我们考虑了从给定的有关其结构的限制的枚举化学图的问题,该构造对最近提出的QSAR/QSPR的新方法具有重要的应用。在本文中,化学图的结构由特征向量指定每个条目代表规定路径的频率。如果将图从树(无环图)获得,我们将其称为2凸出的树,该图是通过在两对非附属顶点之间添加边缘的。鉴于一组特征向量作为特征向量的上限和下限之间的间隔,我们设计了一种有效的算法,用于枚举化学2个增强的树木,以满足集合中某些特征向量指定的路径频率。我们实施了提出的算法,并进行了一些计算实验。

We consider a problem of enumerating chemical graphs from given constraints concerning their structures, which has an important application to a novel method for the inverse QSAR/QSPR recently proposed. In this paper, the structure of a chemical graph is specified by a feature vector each of whose entries represents the frequency of a prescribed path. We call a graph a 2-augmented tree if it is obtained from a tree (an acyclic graph) by adding edges between two pairs of nonadjacent vertices. Given a set of feature vectors as the interval between upper and lower bounds of feature vectors, we design an efficient algorithm for enumerating chemical 2-augmented trees that satisfy the path frequency specified by some feature vector in the set. We implemented the proposed algorithm and conducted some computational experiments.

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