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Studying the strong correlation effects in interacting Dirac fermion systems is one of the most challenging problems in modern condensed matter physics. The long-range Coulomb interaction and the fermion-phonon interaction can lead to a variety of intriguing properties. In the strong-coupling regime, weak-coupling perturbation theory breaks down. The validity of $1/N$ expansion with $N$ being the fermion flavor is also in doubt since $N$ equals to $2$ or $4$ in realistic systems. Here, we investigate the interaction between (1+2)- and (1+3)-dimensional massless Dirac fermions and a generic scalar boson, and develop an efficient non-perturbative approach to access the strong-coupling regime. We first derive a number of self-consistently coupled Ward-Takahashi identities based on a careful symmetry analysis and then use these identities to show that the full fermion-boson vertex function is solely determined by the full fermion propagator. Making use of this result, we rigorously prove that the full fermion propagator satisfies an exact and self-closed Dyson-Schwinger integral equation, which can be solved by employing numerical methods. A major advantage of our non-perturbative approach is that there is no need to employ any small expansion parameter. Our approach provides a unified theoretical framework for studying strong Coulomb and fermion-phonon interactions. It may also be used to approximately handle the Yukawa coupling between fermions and order-parameter fluctuations around continuous quantum critical points. Our approach is applied to treat the Coulomb interaction in undoped graphene. We find that the renormalized fermion velocity exhibits a logarithmic momentum-dependence but is nearly energy independent, and that no excitonic gap is generated by the Coulomb interaction. These theoretical results are consistent with experiments in graphene.